If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 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'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 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'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 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'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 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'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 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'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 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'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 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'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 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'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 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'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 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'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 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'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 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'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 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'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 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'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 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'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ), 'gf_id' => 'HOM05D000849', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000849' ), 'data_identifier' => 'HOM05D000849', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '704', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03160' => 'bna', 'A03p47980' => 'bna', 'A07p00920' => 'bna', 'A07p03690' => 'bna', 'A09p12580' => 'bna', 'A09p19810' => 'bna', 'A09p43970' => 'bna', 'A10p06190' => 'bna', 'Aa31LG4G18960' => 'aar', 'Aa31LG6G12400' => 'aar', 'Aa31LG8G16770' => 'aar', 'Aa31LG9G12660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1184' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4101' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1503' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.940' => 'aag', 'Actinidia00526' => 'ach', 'Actinidia17501' => 'ach', 'Actinidia23317' => 'ach', 'Actinidia25666' => 'ach', 'Actinidia28593' => 'ach', 'Actinidia29424' => 'ach', 'Actinidia29881' => 'ach', 'Actinidia37932' => 'ach', 'Ah.01g017790' => 'amhyb', 'Ah.03g140870' => 'amhyb', 'Ah.09g230330' => 'amhyb', 'AL1G54250' => 'aly', 'AL3G48440' => 'aly', 'AL3G50260' => 'aly', 'AL5G31210' => 'aly', 'AL7G15750' => 'aly', 'Aqoxy4G00621' => 'aox', 'Aqoxy5G00937' => 'aox', 'Aqoxy5G01783' => 'aox', 'Aqoxy6G01117' => 'aox', 'Aqoxy7G01359' => 'aox', 'Aqoxy7G03958' => 'aox', 'arahy.Tifrunner.gnm1.ann1.42ETQS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64Q992' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN9ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GTH68H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV6T2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N11TT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URAI8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VM96MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR2T8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAN4A4' => 'arhy', 'AT1G47830' => 'ath', 'AT2G17380' => 'ath', 'AT2G19790' => 'ath', 'AT3G50860' => 'ath', 'AT4G35410' => 'ath', 'ATR0053G032' => 'atr', 'ATR0182G002' => 'atr', 'ATR0705G079' => 'atr', 'ATR0733G017' => 'atr', 'ATR1125G029' => 'atr', 'ATR1136G043' => 'atr', 'Atru.chr13.299' => 'acertr', 'Atru.chr3.572' => 'acertr', 'Atru.chr7.1508' => 'acertr', 'AUR62003371' => 'cqu', 'AUR62004053' => 'cqu', 'AUR62007568' => 'cqu', 'AUR62010218' => 'cqu', 'AUR62013214' => 'cqu', 'AUR62021360' => 'cqu', 'AUR62029461' => 'cqu', 'AUR62033272' => 'cqu', 'BcaB01g00572' => 'bca', 'BcaB03g16498' => 'bca', 'BcaB03g16769' => 'bca', 'BcaB07g31069' => 'bca', 'BcaB07g33813' => 'bca', 'BcaC02g10771' => 'bca', 'BcaC04g21990' => 'bca', 'BcaC04g22820' => 'bca', 'BcaC06g31753' => 'bca', 'BcaC06g33077' => 'bca', 'BcaC06g33326' => 'bca', 'BcaC06g36265' => 'bca', 'BcaC06g36622' => 'bca', 'BcaC07g39551' => 'bca', 'BcaC08g42977' => 'bca', 'BcaNung00596' => 'bca', 'BcaNung03625' => 'bca', 'BolC1t00340H' => 'bol', 'BolC3t13321H' => 'bol', 'BolC4t24035H' => 'bol', 'BolC6t35347H' => 'bol', 'BolC7t40613H' => 'bol', 'BolC7t40998H' => 'bol', 'BolC7t45117H' => 'bol', 'BolC8t50225H' => 'bol', 'BolC9t54396H' => 'bol', 'BolC9t55406H' => 'bol', 'BraA01t00301Z' => 'bra', 'BraA07t27892Z' => 'bra', 'BraA07t28155Z' => 'bra', 'BraA09t36905Z' => 'bra', 'BraA09t37587Z' => 'bra', 'BraA09t39854Z' => 'bra', 'BraA09t39855Z' => 'bra', 'BraA10t42887Z' => 'bra', 'C01p03510' => 'bna', 'C04p25290' => 'bna', 'C06p02180' => 'bna', 'C07p02080' => 'bna', 'C07p05910' => 'bna', 'C07p45980' => 'bna', 'C08p26070' => 'bna', 'C09p14940' => 'bna', 'C09p25120' => 'bna', 'CAN.G1058.10' => 'can', 'CAN.G1412.9' => 'can', 'CAN.G311.26' => 'can', 'CAN.G358.92' => 'can', 'CAN.G557.8' => 'can', 'CANSAT01G0485' => 'cansat', 'CANSAT25G0122' => 'cansat', 'CANSAT25G0185' => 'cansat', 'CANSAT56G1795' => 'cansat', 'CANSAT56G4405' => 'cansat', 'CARHR037430' => 'chi', 'CARHR107540' => 'chi', 'CARHR110250' => 'chi', 'CARHR160410' => 'chi', 'CARHR181810' => 'chi', 'CARHR243730' => 'chi', 'Carub.0001s3678' => 'cru', 'Carub.0001s3684' => 'cru', 'Carub.0001s3694' => 'cru', 'Carub.0003s3143' => 'cru', 'Carub.0003s3407' => 'cru', 'Carub.0005s1725' => 'cru', 'Carub.0007s0491' => 'cru', 'Ca_16257_v3' => 'car', 'Ca_17379_v3' => 'car', 'Ca_20342_v3' => 'car', 'Ca_30922_v3' => 'car', 'CBR_g2797' => 'cbr', 'CBR_g38774' => 'cbr', 'CBR_g6655' => 'cbr', 'Cc02_g17550' => 'ccan', 'Cc03_g11550' => 'ccan', 'Cc05_g01370' => 'ccan', 'Cc06_g10770' => 'ccan', 'Cc10_g01710' => 'ccan', 'Cc11_g06430' => 'ccan', 'CDE02G0865' => 'cde', 'CDE02G3533' => 'cde', 'CDE04G2710' => 'cde', 'CDE05G2264' => 'cde', 'CDE05G3423' => 'cde', 'CDE06G2687' => 'cde', 'CDE11G0456' => 'cde', 'Cfa004308' => 'cfa', 'Cfa024973' => 'cfa', 'Ciclev10002797m.g' => 'ccl', 'Ciclev10009831m.g' => 'ccl', 'Ciclev10026648m.g' => 'ccl', 'Ciclev10029448m.g' => 'ccl', 'CiPaw.01G038200' => 'cil', 'CiPaw.03G221100' => 'cil', 'CiPaw.04G154300' => 'cil', 'CiPaw.05G095900' => 'cil', 'CiPaw.06G113000' => 'cil', 'CiPaw.07G150600' => 'cil', 'CiPaw.08G066100' => 'cil', 'ClCG02G003150' => 'cla', 'ClCG03G015970' => 'cla', 'ClCG05G018290' => 'cla', 'ClCG07G005920' => 'cla', 'COL.COLO4_10151' => 'col', 'COL.COLO4_18271' => 'col', 'COL.COLO4_18272' => 'col', 'COL.COLO4_22079' => 'col', 'COL.COLO4_26153' => 'col', 'Cpa.g.sc26.37' => 'cpa', 'Cpa.g.sc36.99' => 'cpa', 'Cpa.g.sc523.2' => 'cpa', 'Cpa.g.sc57.88' => 'cpa', 'Cpa.g.sc6.113' => 'cpa', 'Cpa.g.sc78.44' => 'cpa', 'Cre07.g324600' => 'cre', 'Cre07.g330950' => 'cre', 'Cre09.g394100' => 'cre', 'CsaV3_1G039990' => 'csa', 'CsaV3_3G045840' => 'csa', 'CsaV3_5G037100' => 'csa', 'CsaV3_7G002260' => 'csa', 'CSS0006953' => 'camsi', 'CSS0007212' => 'camsi', 'CSS0011248' => 'camsi', 'CSS0012070' => 'camsi', 'CSS0014943' => 'camsi', 'CSS0036455' => 'camsi', 'CSS0040653' => 'camsi', 'CSS0045114' => 'camsi', 'DCAR_022975' => 'dca', 'DCAR_028635' => 'dca', 'Dinv13533' => 'din', 'Dinv23518' => 'din', 'Dinv28600' => 'din', 'Dinv31840' => 'din', 'Dinv34890' => 'din', 'Dinv42272' => 'din', 'Duzib041G0491' => 'dzi', 'Duzib052G0443' => 'dzi', 'Duzib093G1620' => 'dzi', 'Duzib116G0219' => 'dzi', 'Duzib116G0957' => 'dzi', 'Duzib132G0319' => 'dzi', 'Duzib147G1012' => 'dzi', 'Duzib150G0327' => 'dzi', 'Duzib187G0631' => 'dzi', 'Duzib248G1189' => 'dzi', 'Duzib264G0888' => 'dzi', 'ECA232G0612' => 'eca', 'ECA233G0054' => 'eca', 'ECA233G2571' => 'eca', 'ECA236G1123' => 'eca', 'ECA236G3815' => 'eca', 'ECA246G0874' => 'eca', 'EL10Ac6g15478' => 'bvu', 'EL10Ac6g15560' => 'bvu', 'EL10Ac8g18347' => 'bvu', 'EL10Ac9g21571' => 'bvu', 'Eucgr.C00951' => 'egr', 'Eucgr.F01648' => 'egr', 'Eucgr.H05014' => 'egr', 'Eucgr.I02443' => 'egr', 'Eucgr.J00771' => 'egr', 'Eucgr.J01103' => 'egr', 'FAN08G0055' => 'fan', 'FAN08G2450' => 'fan', 'FAN08G2701' => 'fan', 'FAN11G3041' => 'fan', 'FAN13G0592' => 'fan', 'FAN15G2653' => 'fan', 'FAN15G3126' => 'fan', 'FAN18G0868' => 'fan', 'FAN18G4354' => 'fan', 'FAN19G1758' => 'fan', 'FAN19G2393' => 'fan', 'FAN20G1909' => 'fan', 'FAN21G2100' => 'fan', 'FAN23G2560' => 'fan', 'FAN23G3088' => 'fan', 'FAN24G0890' => 'fan', 'FAN26G0314' => 'fan', 'FAN26G0318' => 'fan', 'FAN27G1374' => 'fan', 'FAN27G1779' => 'fan', 'FAN27G2208' => 'fan', 'FAN28G0398' => 'fan', 'FvH4_1g06580' => 'fve', 'FvH4_1g13290' => 'fve', 'FvH4_2g17210' => 'fve', 'FvH4_2g38510' => 'fve', 'FvH4_3g25720' => 'fve', 'FvH4_5g22770' => 'fve', 'FvH4_5g26670' => 'fve', 'Glyma.01G005300' => 'gma', 'Glyma.02G056900' => 'gma', 'Glyma.02G274700' => 'gma', 'Glyma.05G224800' => 'gma', 'Glyma.07G126300' => 'gma', 'Glyma.08G031600' => 'gma', 'Glyma.13G004600' => 'gma', 'Glyma.14G218900' => 'gma', 'Glyma.16G139700' => 'gma', 'Glyma.17G257900' => 'gma', 'Glyma.20G063200' => 'gma', 'Gohir.A02G165400' => 'ghi', 'Gohir.A03G169200' => 'ghi', 'Gohir.A04G110600' => 'ghi', 'Gohir.A05G027200' => 'ghi', 'Gohir.A06G004400' => 'ghi', 'Gohir.A12G012100' => 'ghi', 'Gohir.A12G064766' => 'ghi', 'Gohir.A13G194600' => 'ghi', 'Gohir.D02G192400' => 'ghi', 'Gohir.D03G014601' => 'ghi', 'Gohir.D04G150900' => 'ghi', 'Gohir.D05G029100' => 'ghi', 'Gohir.D06G000200' => 'ghi', 'Gohir.D12G012500' => 'ghi', 'Gohir.D12G064800' => 'ghi', 'Gohir.D13G200300' => 'ghi', 'Gorai.003G014900' => 'gra', 'Gorai.005G215200' => 'gra', 'Gorai.008G012700' => 'gra', 'Gorai.008G068000' => 'gra', 'Gorai.009G029200' => 'gra', 'Gorai.010G004600' => 'gra', 'Gorai.012G137500' => 'gra', 'Gorai.013G229100' => 'gra', 'GSVIVG01009900001' => 'vvi', 'GSVIVG01013725001' => 'vvi', 'GSVIVG01015270001' => 'vvi', 'GSVIVG01018785001' => 'vvi', 'GSVIVG01018959001' => 'vvi', 'GSVIVG01028912001' => 'vvi', 'HanXRQChr06g0174101' => 'han', 'HanXRQChr07g0205251' => 'han', 'HanXRQChr09g0238561' => 'han', 'HanXRQChr11g0322591' => 'han', 'HanXRQChr12g0376311' => 'han', 'HanXRQChr13g0411551' => 'han', 'HanXRQChr16g0505661' => 'han', 'HanXRQChr16g0530431' => 'han', 'HanXRQChr17g0538611' => 'han', 'Haze_02473' => 'cav', 'Haze_15088' => 'cav', 'Haze_22629' => 'cav', 'Haze_25852' => 'cav', 'Haze_26443' => 'cav', 'Haze_26444' => 'cav', 'Haze_26616' => 'cav', 'Haze_27479' => 'cav', 'Hma1.2p1_0633F.1_g192530' => 'hma', 'Hma1.2p1_0633F.1_g192540' => 'hma', 'Hma1.2p1_0638F.1_g193840' => 'hma', 'Hma1.2p1_0663F.1_g198540' => 'hma', 'Hma1.2p1_0914F.1_g236210' => 'hma', 'Hma1.2p1_1375F.1_g279072' => 'hma', 'Hma1.2p1_1375F.1_g279074' => 'hma', 'HPP92_009846' => 'vpl', 'HPP92_011376' => 'vpl', 'HPP92_015721' => 'vpl', 'HPP92_016956' => 'vpl', 'HPP92_017775' => 'vpl', 'HPP92_023609' => 'vpl', 'HPP92_024117' => 'vpl', 'HPP92_026639' => 'vpl', 'Hund06346' => 'sun', 'Hund13976' => 'sun', 'Hund14044' => 'sun', 'Hund26299' => 'sun', 'Lalb_Chr04g0247021' => 'lal', 'Lalb_Chr04g0249681' => 'lal', 'Lalb_Chr09g0333531' => 'lal', 'Lalb_Chr14g0369871' => 'lal', 'Lalb_Chr14g0375221' => 'lal', 'Lalb_Chr17g0342641' => 'lal', 'Lalb_Chr17g0347551' => 'lal', 'Lalb_Chr22g0354341' => 'lal', 'Lalb_Chr24g0393991' => 'lal', 'Lj1g0003590' => 'lja', 'Lj2A453G94' => 'lonja', 'Lj2A453T96' => 'lonja', 'Lj2g0010400' => 'lja', 'Lj4A797T56' => 'lonja', 'Lj4A814G47' => 'lonja', 'Lj4C25G12' => 'lonja', 'Lj4g0006741' => 'lja', 'Lj5A169T99' => 'lonja', 'Lj5A196T51' => 'lonja', 'Lj5g0003940' => 'lja', 'LjContig00081g0016688' => 'lja', 'LjContig00448g0000683' => 'lja', 'LjContig00564g0009090' => 'lja', 'Lsat_1_v5_gn_3_25480' => 'lsa', 'Lsat_1_v5_gn_3_76381' => 'lsa', 'Lsat_1_v5_gn_5_61200' => 'lsa', 'Lsat_1_v5_gn_6_15600' => 'lsa', 'Lsat_1_v5_gn_7_89260' => 'lsa', 'Lsat_1_v5_gn_8_30560' => 'lsa', 'Lsat_1_v5_gn_8_88280' => 'lsa', 'Manes.01G136100' => 'mes', 'Manes.02G210500' => 'mes', 'Manes.03G029400' => 'mes', 'Manes.03G096200' => 'mes', 'Manes.05G147900' => 'mes', 'Manes.15G112700' => 'mes', 'Manes.16G106500' => 'mes', 'Manes.18G013900' => 'mes', 'Mapoly0001s0296' => 'mpo', 'Mapoly0002s0129' => 'mpo', 'Mapoly0016s0005' => 'mpo', 'Mapoly0153s0031' => 'mpo', 'Mapoly0153s0033' => 'mpo', 'MBI03_g24045_MAGBIO' => 'mbi', 'MBI03_g37601_MAGBIO' => 'mbi', 'MBI04_g06989_MAGBIO' => 'mbi', 'MBI05_g15362_MAGBIO' => 'mbi', 'MBI06_g26876_MAGBIO' => 'mbi', 'MBI15_g28802_MAGBIO' => 'mbi', 'MCO04G483' => 'mco', 'MCO15G056' => 'mco', 'MCO15G266' => 'mco', 'MCO16G695' => 'mco', 'MD02G1069000' => 'mdo', 'MD02G1147400' => 'mdo', 'MD05G1145600' => 'mdo', 'MD06G1000900' => 'mdo', 'MD08G1013400' => 'mdo', 'MD10G1145000' => 'mdo', 'MD15G1012800' => 'mdo', 'MD15G1200600' => 'mdo', 'MD15G1261700' => 'mdo', 'Medtr1g025190' => 'mtr', 'Medtr5g087820' => 'mtr', 'Medtr5g098940' => 'mtr', 'Medtr7g100010' => 'mtr', 'Medtr8g077600' => 'mtr', 'Medtr8g102180' => 'mtr', 'MELO3C003754.2' => 'cme', 'MELO3C015429.2' => 'cme', 'MELO3C016632.2' => 'cme', 'MELO3C024167.2' => 'cme', 'Migut.C00827' => 'egut', 'Migut.J01079' => 'egut', 'Migut.K00562' => 'egut', 'Migut.N01240' => 'egut', 'Migut.N03002' => 'egut', 'Migut.N03158' => 'egut', 'MSTRG.19541' => 'ama', 'MSTRG.22066' => 'ama', 'MSTRG.22339' => 'ama', 'MSTRG.24246' => 'ama', 'MSTRG.24532' => 'ama', 'MSTRG.27698' => 'ama', 'MSTRG.6030' => 'ama', 'Nitab4.5_0000178g0090' => 'nta', 'Nitab4.5_0000308g0100' => 'nta', 'Nitab4.5_0000320g0160' => 'nta', 'Nitab4.5_0000337g0130' => 'nta', 'Nitab4.5_0001385g0040' => 'nta', 'Nitab4.5_0002561g0050' => 'nta', 'Nitab4.5_0003414g0010' => 'nta', 'Nitab4.5_0004172g0040' => 'nta', 'Nitab4.5_0004180g0010' => 'nta', 'Nitab4.5_0013267g0020' => 'nta', 'Nn1g05886' => 'nnu', 'Nn2g12824' => 'nnu', 'Nn5g29613' => 'nnu', 'Nn5g30155' => 'nnu', 'Nn5g30615' => 'nnu', 'Nn8g39010' => 'nnu', 'Oeu013088.1' => 'oeu', 'Oeu013504.1' => 'oeu', 'Oeu015996.1' => 'oeu', 'Oeu020869.1' => 'oeu', 'Oeu027540.1' => 'oeu', 'Oeu036246.1' => 'oeu', 'Oeu041645.1' => 'oeu', 'Oeu048292.1' => 'oeu', 'Os01g0353600' => 'osa', 'Os03g0228400' => 'osa', 'Os03g0783700' => 'osa', 'Os03g0811300' => 'osa', 'Os08g0395300' => 'osa', 'Os10g0368400' => 'osa', 'Os12g0207300' => 'osa', 'Peaxi162Scf00016g00740' => 'pax', 'Peaxi162Scf00298g00114' => 'pax', 'Peaxi162Scf00366g00127' => 'pax', 'Peaxi162Scf00400g00511' => 'pax', 'Peaxi162Scf00438g00720' => 'pax', 'Peaxi162Scf00684g00316' => 'pax', 'Peaxi162Scf01732g00027' => 'pax', 'PGR042G3172' => 'pgr', 'PGR083G0293' => 'pgr', 'PGR083G0483' => 'pgr', 'PGR102G1239' => 'pgr', 'PGR119G1873' => 'pgr', 'PGR142G0605' => 'pgr', 'PGSC0003DMG400000707' => 'stu', 'PGSC0003DMG400003596' => 'stu', 'PGSC0003DMG400009862' => 'stu', 'PGSC0003DMG400028942' => 'stu', 'PGSC0003DMG401006035' => 'stu', 'PGSC0003DMG402006035' => 'stu', 'Phvul.001G006900' => 'pvu', 'Phvul.002G306700' => 'pvu', 'Phvul.003G073000' => 'pvu', 'Phvul.003G253500' => 'pvu', 'Phvul.004G173800' => 'pvu', 'Phvul.006G003200' => 'pvu', 'Phvul.008G154900' => 'pvu', 'Phvul.008G207100' => 'pvu', 'Phvul.008G290400' => 'pvu', 'Potri.002G001800' => 'ptr', 'Potri.002G022900' => 'ptr', 'Potri.005G122900' => 'ptr', 'Potri.005G238701' => 'ptr', 'Potri.006G149100' => 'ptr', 'Potri.007G025400' => 'ptr', 'Potri.012G052000' => 'ptr', 'Potri.014G079000' => 'ptr', 'Pp3c12_2376' => 'ppa', 'Pp3c14_14670' => 'ppa', 'Pp3c15_9140' => 'ppa', 'Pp3c26_15020' => 'ppa', 'Pp3c4_27730' => 'ppa', 'Pp3c9_6760' => 'ppa', 'PRCOL_00000274' => 'pco', 'PRCOL_00004671' => 'pco', 'Prupe.1G365900' => 'ppe', 'Prupe.5G001200' => 'ppe', 'Prupe.7G154700' => 'ppe', 'Prupe.7G216600' => 'ppe', 'Prupe.8G183400' => 'ppe', 'Psat0s3288g0080' => 'psa', 'Psat2g022240' => 'psa', 'Psat6g003080' => 'psa', 'Psat7g018560' => 'psa', 'PSO017G6221' => 'pso', 'PSO063G4962' => 'pso', 'PSO170G0858' => 'pso', 'PSO170G2739' => 'pso', 'PSO210G0713' => 'pso', 'PSO210G7720' => 'pso', 'PSO541G1412' => 'pso', 'PSO541G1912' => 'pso', 'PSO675G4482' => 'pso', 'PSO675G5939' => 'pso', 'PSO675G6842' => 'pso', 'PSO782G5042' => 'pso', 'PSO832G0835' => 'pso', 'QL02p011509' => 'qlo', 'QL02p016289' => 'qlo', 'QL02p086970' => 'qlo', 'QL06p046096' => 'qlo', 'QL06p046175' => 'qlo', 'QL11p057031' => 'qlo', 'RcHm_v2.0_Chr2g0092321' => 'rch', 'RcHm_v2.0_Chr2g0101121' => 'rch', 'RcHm_v2.0_Chr2g0101561' => 'rch', 'RcHm_v2.0_Chr6g0281691' => 'rch', 'RcHm_v2.0_Chr6g0302791' => 'rch', 'RcHm_v2.0_Chr7g0217561' => 'rch', 'Rhsim03G0235600' => 'rsi', 'Rhsim06G0099200' => 'rsi', 'Rhsim07G0247000' => 'rsi', 'Rhsim11G0061600' => 'rsi', 'Rhsim11G0063100' => 'rsi', 'Rhsim11G0177500' => 'rsi', 'Sabra02G0018700' => 'sbr', 'Sabra05G0101100' => 'sbr', 'Sabra06G0117900' => 'sbr', 'Sabra07G0022500' => 'sbr', 'Sabra12G0035900' => 'sbr', 'Sabra14G0057200' => 'sbr', 'SalBow3G0676' => 'sbo', 'SalBow3G1791' => 'sbo', 'SalBow6G0558' => 'sbo', 'SalBow6G5864' => 'sbo', 'SalBow8G4123' => 'sbo', 'Sc07g0000400' => 'sci', 'Sc07g0000960' => 'sci', 'Sc08g0001810' => 'sci', 'Sc08g0008140' => 'sci', 'Sc18g0005630' => 'sci', 'Sed0002292' => 'sed', 'Sed0008751' => 'sed', 'Sed0018673' => 'sed', 'Sed0019702' => 'sed', 'Sed0020746' => 'sed', 'Sed0025682' => 'sed', 'SEGI_16743' => 'sgi', 'SEGI_24360' => 'sgi', 'SEGI_24636' => 'sgi', 'SGA_v2.0_scaffold12G05965' => 'sas', 'SGA_v2.0_scaffold19G08727' => 'sas', 'SGA_v2.0_scaffold279G46782' => 'sas', 'SGA_v2.0_scaffold302G47808' => 'sas', 'SGA_v2.0_scaffold43G16449' => 'sas', 'SGA_v2.0_scaffold512G52641' => 'sas', 'SGA_v2.0_scaffold843G53662' => 'sas', 'SGA_v2.0_scaffold92G28234' => 'sas', 'SHI01308' => 'shi', 'SHI01895' => 'shi', 'SHI03952' => 'shi', 'SHI06560' => 'shi', 'SHI07245' => 'shi', 'SHI08070' => 'shi', 'SHI13831' => 'shi', 'SHI16713' => 'shi', 'SHI19583' => 'shi', 'SHI20141' => 'shi', 'SHI21563' => 'shi', 'SHI23604' => 'shi', 'SHI27184' => 'shi', 'SHI27848' => 'shi', 'SHI29266' => 'shi', 'SHI33029' => 'shi', 'SHI33597' => 'shi', 'SHI34965' => 'shi', 'SHI34978' => 'shi', 'SHI35267' => 'shi', 'SHI35365' => 'shi', 'SHI35880' => 'shi', 'SHI38667' => 'shi', 'SHI42703' => 'shi', 'SHI43903' => 'shi', 'SHI44503' => 'shi', 'SHI46084' => 'shi', 'SHI47576' => 'shi', 'SHI47843' => 'shi', 'SHI48149' => 'shi', 'SHI48305' => 'shi', 'SHI49175' => 'shi', 'SHI50198' => 'shi', 'SHI51484' => 'shi', 'SHI51537' => 'shi', 'SHI51872' => 'shi', 'SHI52555' => 'shi', 'SHI52623' => 'shi', 'SHI52725' => 'shi', 'SHI52965' => 'shi', 'SHI53541' => 'shi', 'SHI53623' => 'shi', 'SHI53653' => 'shi', 'SHI54080' => 'shi', 'SMO146G0321' => 'smo', 'SMO196G0114' => 'smo', 'SMO270G0048' => 'smo', 'SMO306G0010' => 'smo', 'SMO306G0031' => 'smo', 'SMO339G0048' => 'smo', 'SMO361G0450' => 'smo', 'Solyc01g109640.3' => 'sly', 'Solyc02g085240.4' => 'sly', 'Solyc04g081410.3' => 'sly', 'Solyc05g026130.3' => 'sly', 'Solyc11g005220.2' => 'sly', 'Sopen01g051830' => 'spe', 'Sopen02g029940' => 'spe', 'Sopen04g035020' => 'spe', 'Sopen05g022340' => 'spe', 'Sopen11g001230' => 'spe', 'Sp2g06950' => 'spa', 'Sp3g30690' => 'spa', 'Sp3g33140' => 'spa', 'Sp5g11360' => 'spa', 'Sp7g33190' => 'spa', 'SpUn0014_0100' => 'spa', 'TAR376G0514' => 'tar', 'TAR381G1185' => 'tar', 'TAR381G1503' => 'tar', 'TAR624G0880' => 'tar', 'TAR625G0387' => 'tar', 'TAR628G0662' => 'tar', 'TAR636G1139' => 'tar', 'THA.LOC104806887' => 'tha', 'THA.LOC104814582' => 'tha', 'THA.LOC104819207' => 'tha', 'THA.LOC104819702' => 'tha', 'THA.LOC104820037' => 'tha', 'Thecc.01G000600' => 'tca', 'Thecc.01G000800' => 'tca', 'Thecc.01G035700' => 'tca', 'Thecc.02G149500' => 'tca', 'Thecc.08G043800' => 'tca', 'Thecc.08G097600' => 'tca', 'Thecc.09G096900' => 'tca', 'Thhalv10002117m.g' => 'esa', 'Thhalv10003287m.g' => 'esa', 'Thhalv10010773m.g' => 'esa', 'Thhalv10011851m.g' => 'esa', 'Thhalv10022887m.g' => 'esa', 'Thhalv10022930m.g' => 'esa', 'Thhalv10026443m.g' => 'esa', 'TPR.G22221' => 'tpr', 'TPR.G24126' => 'tpr', 'TPR.G33429' => 'tpr', 'TPR.G34776' => 'tpr', 'TPR.G7300' => 'tpr', 'TWI36G0316' => 'twi', 'TWI38G1500' => 'twi', 'TWI56G0734' => 'twi', 'TWI63G0367' => 'twi', 'TWI73G0497' => 'twi', 'TWI75G1792' => 'twi', 'TWI79G1396' => 'twi', 'unitig_26.g9704' => 'ugi', 'unitig_699.g19462' => 'ugi', 'unitig_746.g26815' => 'ugi', 'unitig_8.g3431' => 'ugi', 'vmacro00780' => 'vma', 'vmacro02102' => 'vma', 'vmacro04349' => 'vma', 'vmacro06264' => 'vma', 'vmacro12507' => 'vma', 'VMungo0251G1053' => 'vmu', 'VMungo0251G1363' => 'vmu', 'VMungo0331G0894' => 'vmu', 'VMungo0464G2126' => 'vmu', 'VMungo0647G0527' => 'vmu', 'VMungo0647G1505' => 'vmu', 'VMungo0647G1909' => 'vmu', 'Zm00001eb059770' => 'zma', 'Zm00001eb062120' => 'zma', 'Zm00001eb112310' => 'zma', 'Zm00001eb138360' => 'zma', 'Zm00001eb178620' => 'zma', 'Zm00001eb213540' => 'zma', 'Zm00001eb349190' => 'zma', 'Zm00001eb399330' => 'zma' ) $gf_id = 'HOM05D000849' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000849' ) $data_identifier = 'HOM05D000849' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 2, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 44, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399330' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1